/tools/SiamDiff

SiamDiff

DeepGraphLearning/SiamDiff

42 stars6 forksPythonAdded February 5, 2026
summary

SiamDiff is a codebase for a diffusion-based pre-training algorithm that enhances protein structure encoders. It improves performance on tasks such as protein-protein interaction prediction and function annotation by learning effective representations from protein sequences and structures.

description

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)

topics

pre-trainingproteinprotein-protein-interactionprotein-representation-learning

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