/tools/pepdesign
pepdesign
duyjimmypham/pepdesign
2 stars1 forksPythonAdded February 8, 2026
summary
PepDesign is a modular pipeline designed for computational peptide design and optimization. It integrates advanced deep learning models for generating peptide sequences, predicting structures, and scoring based on physicochemical properties, making it a valuable tool in drug discovery and protein engineering.
description
A modular, extensible peptide design pipeline with target preparation, backbone generation, sequence design, scoring, and ranking. Full local CPU pipeline, and backend hooks for RFpeptides, ProteinMPNN/LigandMPNN, and ColabFold.
topics
alphafoldbioinformaticscolabfoldcomputational-biologydrug-discoverymachine-learningpeptide-designproteinmpnnrfdiffusionstructure-prediction
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